SubtiBank SubtiBank
ydeQ [2018-02-13T01:51:45.000Z]
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ydeQ [2018-02-13T01:51:45.000Z]

similar to NAD(P)H oxidoreductase
locus
BSU05300
pI
6.06
mw
22.69 kDa
protein length
197 aa Sequence Blast
gene length
591 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.1|Electron transport and ATP synthesis] → [category|SW 2.1.4|Electron transport/ other/ based on similarity]

    • Gene

    Coordinates
    576,209 → 576,802

    The protein

    Protein family

  • NAD(P)H dehydrogenase (quinone) family (according to Swiss-Prot)

    • Paralogous protein(s)

  • [protein|2EA9792C1C7CD89E43742F57FFB7300725B6AEF4|YrkL], [protein|E8048E181756BCE307CF28CF31664421404748A4|YwrO]

    • [SW|Cofactors]

  • FMN or FAD [Pubmed|21635694]

    • Structure

  • [PDB|5LVA] (from Streptomyces violaceus, 55% identity) [pubmed|27714222]

    • Expression and Regulation

    Operons

    genes
    [gene|2782BD764716CF5FAD0988284310CF75508F2286|ydeQ]
    description
    [pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-C138 (ydeQ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2136 NBRP B. subtilis, Japan]
  • BKE05300 (Δ[gene|2782BD764716CF5FAD0988284310CF75508F2286|ydeQ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05300 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCCTTTCATTCCTTAGA, downstream forward: _UP4_TAAAGATTGATTTTTGAAAA
  • BKK05300 (Δ[gene|2782BD764716CF5FAD0988284310CF75508F2286|ydeQ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05300 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCCTTTCATTCCTTAGA, downstream forward: _UP4_TAAAGATTGATTTTTGAAAA

    • References

    Research papers

  • 27714222